Detailed information of SNP:
|
SNP ID:
sf0410425528(Gbrowse)
Chromosome: chr04 Position: 10425528 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 52.48% | 47.52% |
| All Indica | 775 | 82.58% | 17.42% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 361 | 80.06% | 19.94% |
| Indica II | 208 | 80.77% | 19.23% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410425528 | C->T | INTERGENIC | None |