Detailed information of SNP:
|
SNP ID:
sf0410441759(Gbrowse)
Chromosome: chr04 Position: 10441759 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 91.98% | 8.02% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 490 | 81.84% | 18.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 90 | 23.33% | 76.67% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410441759 | G->A | INTERGENIC | None |