Detailed information of SNP:
|
SNP ID:
sf0410485804(Gbrowse)
Chromosome: chr04 Position: 10485804 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 63.36% | 36.64% |
| All Indica | 770 | 85.06% | 14.94% |
| All Japonica | 486 | 23.66% | 76.34% |
| Aus | 61 | 93.44% | 6.56% |
| Indica I | 359 | 85.24% | 14.76% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 201 | 80.60% | 19.40% |
| Temperate Japonica | 326 | 5.52% | 94.48% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410485804 | C->T | INTERGENIC | None |