Detailed information of SNP:
|
SNP ID:
sf0410525180(Gbrowse)
Chromosome: chr04 Position: 10525180 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 94.50% | 5.50% |
| All Indica | 763 | 91.22% | 8.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 358 | 89.11% | 10.89% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 199 | 91.46% | 8.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410525180 | A->G | INTERGENIC | None |