Detailed information of SNP:
|
SNP ID:
sf0410534512(Gbrowse)
Chromosome: chr04 Position: 10534512 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 92.37% | 7.63% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 494 | 80.97% | 19.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410534512 | G->A | LOC_Os04g18980(LOC_Os04g18980.1) | Synonymous |