Detailed information of SNP:
|
SNP ID:
sf0410574140(Gbrowse)
Chromosome: chr04 Position: 10574140 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 96.50% | 3.50% |
| All Indica | 785 | 94.90% | 5.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410574140 | T->A | INTERGENIC | None |