Detailed information of SNP:



SNP ID: sf0410585206(Gbrowse)

Chromosome: chr04

Position: 10585206
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 91.46% 8.54%
All Indica799 99.87% 0.13%
All Japonica495 76.57% 23.43%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica333 67.87% 32.13%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0410585206 T->C LOC_Os04g19090(LOC_Os04g19090.1) Non-Synonymous SNP