Detailed information of SNP:
SNP ID:
sf0410585206(Gbrowse)
Chromosome: chr04 Position: 10585206 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 91.46% | 8.54% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 495 | 76.57% | 23.43% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 333 | 67.87% | 32.13% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 86.76% | 13.24% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0410585206 | T->C | LOC_Os04g19090(LOC_Os04g19090.1) | Non-Synonymous SNP |