Detailed information of SNP:
|
SNP ID:
sf0410589227(Gbrowse)
Chromosome: chr04 Position: 10589227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.43% | 10.57% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 76.86% | 23.14% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410589227 | G->A | LOC_Os04g19090(LOC_Os04g19090.1) | Non-Synonymous SNP |