Detailed information of SNP:
|
SNP ID:
sf0410639477(Gbrowse)
Chromosome: chr04 Position: 10639477 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 71.11% | 28.89% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 490 | 19.39% | 80.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410639477 | T->C | INTERGENIC | None |