Detailed information of SNP:
|
SNP ID:
sf0410650454(Gbrowse)
Chromosome: chr04 Position: 10650454 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 95.58% | 4.42% |
| All Indica | 782 | 92.20% | 7.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 99.73% | 0.27% |
| Indica II | 210 | 80.48% | 19.52% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410650454 | A->T | INTERGENIC | None |