Detailed information of SNP:
|
SNP ID:
sf0410666032(Gbrowse)
Chromosome: chr04 Position: 10666032 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 52.17% | 47.83% |
| All Indica | 701 | 21.54% | 78.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 8.20% | 91.80% |
| Indica I | 316 | 17.09% | 82.91% |
| Indica II | 192 | 34.90% | 65.10% |
| Indica Intermediate | 193 | 15.54% | 84.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410666032 | C->T | LOC_Os04g19210(LOC_Os04g19210.1) | INTRON |