Detailed information of SNP:
|
SNP ID:
sf0410679633(Gbrowse)
Chromosome: chr04 Position: 10679633 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 95.47% | 4.53% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 471 | 86.84% | 13.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 80.45% | 19.55% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410679633 | A->T | INTERGENIC | None |