Detailed information of SNP:
|
SNP ID:
sf0410682985(Gbrowse)
Chromosome: chr04 Position: 10682985 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 92.71% | 7.29% |
| All Indica | 794 | 93.83% | 6.17% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410682985 | C->T | INTERGENIC | None |