Detailed information of SNP:
|
SNP ID:
sf0410693899(Gbrowse)
Chromosome: chr04 Position: 10693899 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 72.12% | 27.88% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 22.78% | 77.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410693899 | A->G | LOC_Os04g19260(LOC_Os04g19260.1) | Non-Synonymous SNP |