Detailed information of SNP:
|
SNP ID:
sf0410718684(Gbrowse)
Chromosome: chr04 Position: 10718684 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.99% | 15.01% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410718684 | G->A | INTERGENIC | None |