Detailed information of SNP:
|
SNP ID:
sf0410761379(Gbrowse)
Chromosome: chr04 Position: 10761379 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 86.71% | 13.29% |
| All Indica | 757 | 75.96% | 24.04% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 54.20% | 45.80% |
| Indica II | 206 | 96.12% | 3.88% |
| Indica Intermediate | 206 | 92.23% | 7.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410761379 | G->A | LOC_Os04g19360(LOC_Os04g19360.1) | Non-Synonymous SNP |