Detailed information of SNP:
|
SNP ID:
sf0410772091(Gbrowse)
Chromosome: chr04 Position: 10772091 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1312 | 98.86% | 1.14% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 393 | 96.18% | 3.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 252 | 97.62% | 2.38% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 47 | 85.11% | 14.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410772091 | C->A | INTERGENIC | None |