Detailed information of SNP:
|
SNP ID:
sf0410811769(Gbrowse)
Chromosome: chr04 Position: 10811769 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 57.43% | 42.57% |
| All Indica | 725 | 77.79% | 22.21% |
| All Japonica | 496 | 22.98% | 77.02% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 331 | 80.66% | 19.34% |
| Indica II | 201 | 67.16% | 32.84% |
| Indica Intermediate | 193 | 83.94% | 16.06% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410811769 | T->C | LOC_Os04g19420(LOC_Os04g19420.1) | Non-Synonymous SNP |