Detailed information of SNP:
|
SNP ID:
sf0410815088(Gbrowse)
Chromosome: chr04 Position: 10815088 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 55.06% | 44.94% |
| All Indica | 775 | 29.68% | 70.32% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 362 | 24.03% | 75.97% |
| Indica II | 207 | 44.44% | 55.56% |
| Indica Intermediate | 206 | 24.76% | 75.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410815088 | A->G | INTERGENIC | None |