Detailed information of SNP:
|
SNP ID:
sf0410863127(Gbrowse)
Chromosome: chr04 Position: 10863127 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.82% | 40.18% |
| All Indica | 799 | 45.18% | 54.82% |
| All Japonica | 496 | 77.62% | 22.38% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 20.00% | 80.00% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410863127 | C->T | LOC_Os04g19520(LOC_Os04g19520.1) | Non-Synonymous SNP |