Detailed information of SNP:
|
SNP ID:
sf0410872067(Gbrowse)
Chromosome: chr04 Position: 10872067 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.65% | 3.35% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 485 | 95.67% | 4.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 85 | 82.35% | 17.65% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410872067 | C->T | LOC_Os04g19540(LOC_Os04g19540.1) | Synonymous |