Detailed information of SNP:
|
SNP ID:
sf0410930182(Gbrowse)
Chromosome: chr04 Position: 10930182 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 798 | 38.97% | 61.03% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 19.73% | 80.27% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410930182 | T->A | LOC_Os04g19630(LOC_Os04g19630.1) | INTRON |