Detailed information of SNP:
|
SNP ID:
sf0410956325(Gbrowse)
Chromosome: chr04 Position: 10956325 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 98.28% | 1.72% |
| All Indica | 780 | 96.92% | 3.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 370 | 97.30% | 2.70% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 203 | 98.03% | 1.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410956325 | T->C | INTERGENIC | None |