Detailed information of SNP:
|
SNP ID:
sf0410958469(Gbrowse)
Chromosome: chr04 Position: 10958469 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 61.81% | 38.19% |
| All Indica | 790 | 87.34% | 12.66% |
| All Japonica | 493 | 15.21% | 84.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 86.60% | 13.40% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410958469 | A->G | LOC_Os04g19660(LOC_Os04g19660.1) | Non-Synonymous SNP |