Detailed information of SNP:
|
SNP ID:
sf0410960408(Gbrowse)
Chromosome: chr04 Position: 10960408 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 97.63% | 2.37% |
| All Indica | 767 | 97.39% | 2.61% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 40 | 77.50% | 22.50% |
| Indica I | 358 | 97.77% | 2.23% |
| Indica II | 205 | 98.05% | 1.95% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410960408 | G->A | LOC_Os04g19660(LOC_Os04g19660.1) | Synonymous |