Detailed information of SNP:
|
SNP ID:
sf0410964125(Gbrowse)
Chromosome: chr04 Position: 10964125 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 81.44% | 18.56% |
| All Indica | 662 | 64.65% | 35.35% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 316 | 45.57% | 54.43% |
| Indica II | 181 | 81.22% | 18.78% |
| Indica Intermediate | 165 | 83.03% | 16.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410964125 | G->A | INTERGENIC | None |