Detailed information of SNP:
|
SNP ID:
sf0410965218(Gbrowse)
Chromosome: chr04 Position: 10965218 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1278 | 95.93% | 4.07% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 359 | 85.52% | 14.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 219 | 77.17% | 22.83% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 48 | 97.92% | 2.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410965218 | C->A | INTERGENIC | None |