Detailed information of SNP:
|
SNP ID:
sf0410973527(Gbrowse)
Chromosome: chr04 Position: 10973527 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 90.86% | 9.14% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 491 | 78.41% | 21.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 88 | 7.95% | 92.05% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410973527 | A->G | INTERGENIC | None |