Detailed information of SNP:
|
SNP ID:
sf0410976262(Gbrowse)
Chromosome: chr04 Position: 10976262 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1261 | 69.39% | 30.61% |
| All Indica | 795 | 94.21% | 5.79% |
| All Japonica | 346 | 9.25% | 90.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 78.10% | 21.90% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 205 | 14.15% | 85.85% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 48 | 2.08% | 97.92% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410976262 | G->A | LOC_Os04g19684(LOC_Os04g19684.2) | INTRON |
| sf0410976262 | G->A | LOC_Os04g19684(LOC_Os04g19684.1) | INTRON |