Detailed information of SNP:
|
SNP ID:
sf0411088512(Gbrowse)
Chromosome: chr04 Position: 11088512 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 66.38% | 33.62% |
| All Indica | 778 | 51.41% | 48.59% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 360 | 67.50% | 32.50% |
| Indica II | 211 | 49.29% | 50.71% |
| Indica Intermediate | 207 | 25.60% | 74.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411088512 | C->T | LOC_Os04g19900(LOC_Os04g19900.1) | INTRON |