Detailed information of SNP:
|
SNP ID:
sf0411105763(Gbrowse)
Chromosome: chr04 Position: 11105763 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 72.97% | 27.03% |
| All Indica | 793 | 63.30% | 36.70% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 81.82% | 18.18% |
| Indica II | 210 | 55.24% | 44.76% |
| Indica Intermediate | 209 | 38.28% | 61.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411105763 | T->A | INTERGENIC | None |