Detailed information of SNP:



SNP ID: sf0411106708(Gbrowse)

Chromosome: chr04

Position: 11106708
Major allele: T

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1417 58.22% 41.78%
All Indica797 91.47% 8.53%
All Japonica497 0.60% 99.40%
Aus67 98.51% 1.49%
Indica I374 97.86% 2.14%
Indica II213 75.12% 24.88%
Indica Intermediate210 96.67% 3.33%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 42.86% 57.14%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0411106708 A->T LOC_Os04g19940(LOC_Os04g19940.1) Non-Synonymous SNP