Detailed information of SNP:
|
SNP ID:
sf0411106708(Gbrowse)
Chromosome: chr04 Position: 11106708 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.22% | 41.78% |
| All Indica | 797 | 91.47% | 8.53% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411106708 | A->T | LOC_Os04g19940(LOC_Os04g19940.1) | Non-Synonymous SNP |