Detailed information of SNP:
|
SNP ID:
sf0411110802(Gbrowse)
Chromosome: chr04 Position: 11110802 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1313 | 69.84% | 30.16% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 393 | 11.20% | 88.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 254 | 15.75% | 84.25% |
| Tropical Japonica | 90 | 2.22% | 97.78% |
| Japonica Intermediate | 49 | 4.08% | 95.92% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411110802 | G->A | INTERGENIC | None |