Detailed information of SNP:
|
SNP ID:
sf0411119812(Gbrowse)
Chromosome: chr04 Position: 11119812 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.03% | 29.97% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411119812 | G->A | INTERGENIC | None |