Detailed information of SNP:
|
SNP ID:
sf0411141319(Gbrowse)
Chromosome: chr04 Position: 11141319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 73.06% | 26.94% |
| All Indica | 797 | 63.11% | 36.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 209 | 38.76% | 61.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411141319 | G->A | INTERGENIC | None |