Detailed information of SNP:
|
SNP ID:
sf0411200801(Gbrowse)
Chromosome: chr04 Position: 11200801 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.32% | 9.68% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 493 | 78.09% | 21.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411200801 | C->T | LOC_Os04g20120(LOC_Os04g20120.1) | Non-Synonymous SNP |