Detailed information of SNP:
|
SNP ID:
sf0411201064(Gbrowse)
Chromosome: chr04 Position: 11201064 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.61% | 6.39% |
| All Indica | 789 | 89.61% | 10.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 205 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411201064 | C->T | LOC_Os04g20120(LOC_Os04g20120.1) | Non-Synonymous SNP |