Detailed information of SNP:
|
SNP ID:
sf0411203035(Gbrowse)
Chromosome: chr04 Position: 11203035 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 92.76% | 7.24% |
| All Indica | 748 | 90.37% | 9.63% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 59 | 71.19% | 28.81% |
| Indica I | 359 | 93.87% | 6.13% |
| Indica II | 201 | 89.05% | 10.95% |
| Indica Intermediate | 188 | 85.11% | 14.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411203035 | A->T | LOC_Os04g20120(LOC_Os04g20120.1) | INTRON |
| sf0411203035 | A->T | LOC_Os04g20120(LOC_Os04g20120.1) | SNPs that disrupt splice sites |