Detailed information of SNP:
|
SNP ID:
sf0411314199(Gbrowse)
Chromosome: chr04 Position: 11314199 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.98% | 28.02% |
| All Indica | 797 | 61.48% | 38.52% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 209 | 34.45% | 65.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411314199 | G->A | LOC_Os04g20270(LOC_Os04g20270.2) | INTRON |
| sf0411314199 | G->A | LOC_Os04g20270(LOC_Os04g20270.1) | INTRON |