Detailed information of SNP:
|
SNP ID:
sf0411344533(Gbrowse)
Chromosome: chr04 Position: 11344533 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 55.40% | 44.60% |
| All Indica | 788 | 28.81% | 71.19% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 368 | 31.25% | 68.75% |
| Indica II | 211 | 30.33% | 69.67% |
| Indica Intermediate | 209 | 22.97% | 77.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411344533 | G->A | INTERGENIC | None |