Detailed information of SNP:
|
SNP ID:
sf0411344636(Gbrowse)
Chromosome: chr04 Position: 11344636 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 96.63% | 3.37% |
| All Indica | 780 | 93.97% | 6.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 208 | 81.73% | 18.27% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411344636 | G->A | INTERGENIC | None |