Detailed information of SNP:
|
SNP ID:
sf0411378142(Gbrowse)
Chromosome: chr04 Position: 11378142 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 81.49% | 18.51% |
| All Indica | 707 | 69.45% | 30.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 70.18% | 29.82% |
| Indica I | 333 | 77.18% | 22.82% |
| Indica II | 183 | 69.95% | 30.05% |
| Indica Intermediate | 191 | 55.50% | 44.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411378142 | A->T | LOC_Os04g20350(LOC_Os04g20350.1) | Non-Synonymous SNP |