Detailed information of SNP:
|
SNP ID:
sf0411389522(Gbrowse)
Chromosome: chr04 Position: 11389522 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 97.22% | 2.78% |
| All Indica | 784 | 95.28% | 4.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411389522 | C->T | INTERGENIC | None |