Detailed information of SNP:
|
SNP ID:
sf0411395016(Gbrowse)
Chromosome: chr04 Position: 11395016 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 73.86% | 26.14% |
| All Indica | 790 | 64.68% | 35.32% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 3.08% | 96.92% |
| Indica I | 372 | 83.06% | 16.94% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 206 | 40.29% | 59.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411395016 | A->G | LOC_Os04g20390(LOC_Os04g20390.1) | Non-Synonymous SNP |