Detailed information of SNP:
|
SNP ID:
sf0411398382(Gbrowse)
Chromosome: chr04 Position: 11398382 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 72.37% | 27.63% |
| All Indica | 796 | 62.06% | 37.94% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 208 | 35.58% | 64.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411398382 | C->T | INTERGENIC | None |