Detailed information of SNP:
|
SNP ID:
sf0411617731(Gbrowse)
Chromosome: chr04 Position: 11617731 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 58.70% | 41.30% |
| All Indica | 785 | 93.76% | 6.24% |
| All Japonica | 493 | 1.22% | 98.78% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 202 | 92.57% | 7.43% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411617731 | T->C | INTERGENIC | None |