Detailed information of SNP:
|
SNP ID:
sf0411627219(Gbrowse)
Chromosome: chr04 Position: 11627219 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 95.89% | 4.11% |
| All Indica | 767 | 94.26% | 5.74% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 356 | 92.13% | 7.87% |
| Indica II | 205 | 96.59% | 3.41% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411627219 | C->G | INTERGENIC | None |