Detailed information of SNP:
|
SNP ID:
sf0411633509(Gbrowse)
Chromosome: chr04 Position: 11633509 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.38% | 27.62% |
| All Indica | 794 | 94.21% | 5.79% |
| All Japonica | 495 | 33.13% | 66.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 17.96% | 82.04% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411633509 | A->G | LOC_Os04g20749(LOC_Os04g20749.2) | UTR_3_PRIME |
| sf0411633509 | A->G | LOC_Os04g20749(LOC_Os04g20749.1) | UTR_3_PRIME |