Detailed information of SNP:
|
SNP ID:
sf0411656588(Gbrowse)
Chromosome: chr04 Position: 11656588 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1281 | 91.73% | 8.27% |
| All Indica | 699 | 88.27% | 11.73% |
| All Japonica | 468 | 97.44% | 2.56% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 314 | 84.08% | 15.92% |
| Indica II | 205 | 93.17% | 6.83% |
| Indica Intermediate | 180 | 90.00% | 10.00% |
| Temperate Japonica | 313 | 96.81% | 3.19% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411656588 | A->G | LOC_Os04g20790(LOC_Os04g20790.1) | Synonymous |