Detailed information of SNP:
|
SNP ID:
sf0411660532(Gbrowse)
Chromosome: chr04 Position: 11660532 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 91.63% | 8.37% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 492 | 88.82% | 11.18% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 331 | 88.52% | 11.48% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411660532 | A->G | LOC_Os04g20790(LOC_Os04g20790.1) | INTRON |